UZH
From PRAGMAgridWIKI
Contents |
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University of Zurich, Switzerland
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Cluster Maintenance
None currently.
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Contacts
- Technical staff:
- System administrator - Mike Packard
- Software architect - Nadya Williams
- Application drivers:
- GAMESS/APBS - Celine Amoreira, Prof. Dr. Kim Baldridge
- SIESTA - Prof. Dr. Alberto Garcia, Dr. Laura Zoppi
- Management personnel:
- Research group head - Prof. Dr. Kim Baldridge
- Account requests and technical problems:
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Web Pages
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Cluster Hardware
- Number of nodes:
- Frontends - 1(public network)
- Compute nodes - 16 (private network)
- CPU/Memory:
- Frontends - Intel(R) Xeon(TM) 2 CPU 2.80 GHz / 2 GB RAM
- Compute nodes 0 - 7 - Intel(R) Xeon(TM) 2 CPU 2.80 GHz / 2 GB RAM
- Compute nodes 8 - 15 - Intel(R) Xeon(R) 2 CPU 1.60 GHz / 2 GB RAM
- HDD:
- Frontend - 135 GB (/export/$HOME)
- Compute nodes 0 - 7 21 GB (not shared)
- Compute nodes 8 - 15 61 GB (not shared)
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OS and System Software
- Rocks v4.3 (Mars Hill)
- Rolls:
- apbs
- autodock
- bio
- condor
- grid
- hpc
- java
- mgl
- opal
- sce
- sge
- web-server
- Middleware:
- Gfarm v1.4.1
- Nimrod Portal v1.2.0
- Globus Toolkit v4.0.4
NOTE: When using globus please specify non-default ports in your scripts as needed.
| Service | Port |
|---|---|
| gsiftp | 7811 |
| mds | 7135 |
| gatekeeper | 2119 |
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Resource Status
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Application Status
List of applications installed on the cluster. In case of multiple versions, the default is 'listed.
- GAMESS versions
- 7 SEP 2006 (R4) (in /share/apps/gamess_2006)
- 24 MAR 2007 (R3) (in /share/apps/gamess_2007) default
- APBS v.0.5.1 (in /opt/apbs)
- Autodock v3.0.5 (/share/apps/nordugrid/software/apps/autodock-3.0.5/bin/autodock3)
- Autodock v4.0.1 (/opt/mgl/bin/autodock4) default
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Applications Notes
- Please use the name ocikbpra.unizh.ch and not ocikbpra.uzh.ch whenever needed in your setup configuration and shell scripts when running your applications.
- Globus users please use the following on-default ports:
- gsiftp: 7811
- MDS: 7135
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User Mapping
This table provides mapping from a real user name to an account.
| Name | Account | Name | Account | |
|---|---|---|---|---|
| AvianFlu Grid | afguser | Alberto Garcia | agarcia | |
| Allyson Clark | allyson | Anna Pham | alpham | |
| Steve Androulakis | androulakis | Tan Kah Bee | avery | |
| Arielle Yablonovitch | ayablono | Blair Bethwaite | blair | |
| Christopher Lau | cdlau | Claudio Baeza | claudio | |
| Colin Enticott | cme | Dee Chen | deemc | |
| Donny Kurniawan | donny | Elisa Ann Abate | eabate | |
| Jongbae Moon | eairs | Fang-Pang Lin | fplin | |
| Grid Accounting | gridacct | Habibah Wahab | habibah | |
| Hangi Kim | hgkim | Haley Selma Hunter-Zinck | hhunterz | |
| Hsing Pao | hsing | Tsutomu Ikegami | ikegami | |
| John Sanabria | jas | James Frey | jfrey | |
| Qingnan Guo | jluser | Jacqueline Chin | jpchin | |
| Jysoo Lee | jysoo | Lisa Yung | liyung | |
| Lynn Shiao Tai | lstai | Laura Zoppi | lzoppi | |
| Mark Aaron Bate | mark | Marshall James Levesque | mlevesqu | |
| Matthew Mui | mmui | Maria Amalia Prada Fernandez | mpradafe | |
| Nicholas Echols | nechols | Susume Date | osakauser | |
| Phillip Dao Pham | pdpham | Randy Lee | ralee | |
| Ramya Chitters | rchitter | Rachel Leeann Chu | rchu | |
| Robert Jesse Chen | rjc | Sameer Shashikant Tilak | sameer | |
| Suraj Pandey | spandey | Scott Revelli | srevelli | |
| Yusuke Tanimura | tanisuke | Osamu Tatebe | tatebe | |
| Tim Ho | tim | Thanh Truong | truong | |
| Varahenage Ranmali Perera | vperera | Wilfred Li | wilfred | |
| Wen-wai Yim | wyim | Simon Xianhe Han | xhan | |
| Yoshio Tanaka | yoshio | Zhao-Hui Ding | zding | |
| Cindy Zheng | zhengc |
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Prioritized Tasks
- none
